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In Press Marin Jarrin, J.R., A.L. Shanks, and M.A. Banks. In Press. Confirmation of the presence and use of sandy beach surf-zones by juvenile Chinook salmon. Environmental Biology of Fishes Stick D.A., C.J. Langdon, M.A. Banks, M.D. Camara. In press. Nineteen Novel Microsatellite Markers for the Olympia Oyster, Ostrea conchaphila/lurida Molecular Ecology Resources 2008 Stick D.A., C.J. Langdon, M.A. Banks, and M.D. Camara. 2008. Preliminary analyses of genetic structure within and among remnant populations of the olympia oyster, Ostrea conchaphila. Journal of Shellfish Research27(2):471-472. (abstract only) O’Malley,* K.G. and M.A. Banks. 2008. A latitudinal cline in the Chinook salmon (Oncorhynchus tshawytscha) Clock gene: evidence for selection on PolyQ length variants. Proceedings of the Royal Society B. doi:10.1098/rspb.2008.0524 Top featured article for week starting August 20 Narum, S. R., M.A. Banks, T. D. Beacham, M. R. Bellinger, M. R. Campbell, J. Dekoning, A. Elz, C. M. Guthrie III,C. Kozfkay, K. M. Miller, P. Moran, R. Phillips, L. W. Seeb, C. T. Smith, , K. Warheit, S. F. Young and J. C. Garza. 2008. Differentiating salmon populations at broad and fine geographical scales with microsatellites and single nucleotide polymorphisms. Molecular Ecology. 17, 3464–3477 Johansson, M. L., M.A. Banks, K.D. Glunt, H.M. Hassel-Finnegan, V.P. Buonaccorsi. 2008. Influence of habitat discontinuity, geographical distance, and oceanography on fine-scale population genetic structure of copper rockfish (Sebastes caurinus) Molecular Ecology. 17(13): 3051-3061. Matson S.E., M.D. Camara, W. Eichert, and M.A. Banks. 2008. P-LOCI: a computer program for choosing the most efficient set of loci for parentage assignment. Molecular Ecology Resources. 8(4): 765-768. Guy T.J., R.E. Gresswell, and M.A. Banks. 2008. Landscape-scale evaluation of genetic structure among barrier-isolated populations of coastal cutthroat trout, Oncorhynchus clarkii clarkia. Canadian Journal of Fisheries and Aquatic Science. 65: 1749–1762 Bernier J.C., S.R. Birkeland, M.J. Cipriano, A.G. McArthur, M.A. Banks. 2008. Differential gene expression between fall and spring run Chinook salmon assessed by long serial analysis of gene expression (LongSAGE). Transactions of the American Fisheries Society. 137:1378-1388. Johnson, M.A., and M. A. Banks. 2008. Genetic structure, migration and patterns of allelic richness among coho salmon (Oncorhynchus kisutch) populations of the Oregon Coast. Canadian Journal of Fisheries and Aquatic Science 75(7): 1274-1285 O’Malley, K. G., and M. A. Banks. 2008. Duplicated Clock genes with unique polyglutamine domains provide evidence for nonhomologous recombination in Chinook salmon (Oncorhynchus tshawytscha). Genetica. 132:87-94. 2007 Seeb, L.W., A. Antonovich, M.A. Banks, T.D. Beacham, M.R. Bellinger, S.M. Blankenship, M. Campbell, N.A. Decovish, J.C. Garza, C.M. Guthrie III, T.A. Lundrigan, P. Moran, S.R. Narum, J.J. Stephenson, K.J. Supernault, D.J. Teel, W.D. Templin, J.K. Wenburg, S.F. Young, and C.T. Smith. 2007. Development of a standardized DNA database for Chinook salmon. Fisheries. 32: 540-542. G. R. Moyer, M. S. Blouin, and M. A. Banks. 2007. The influence of family-correlated survival on Nb/N for progeny from integrated multi- and single-generation hatchery stocks of coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Science. 64: 1258-1265. O’Malley, K. G., M.D. Camara, and M.A. Banks. 2007. Candidate loci reveal genetic differentiation between temporally divergent migratory runs of Chinook salmon (Oncorhynchus tshawytscha). Molecular Ecology. 16:4930-4941. Bucklin, K., M.A. Banks, and D. Hedgecock. 2007. Assessing genetic diversity of protected coho salmon populations in California. Canadian Journal of Fisheries and Aquatic Science. 64:30-42. Gomez-Uchida, D., and M.A. Banks. 2007. A simulation approach of population differentiation and individual assignment to assess the relevance of special genetic data among rockfish. In: Biology, Assessment and Management of Pacific Rockfishes. Eds. J. Heifetz, J. DiCosimo, A.J. Gharrett, M.S. Love, V.M. O'Connell, and R.D. Stanley. AK-SG-07-01 2005 Wakefield symposium: 141-152. 2006 Gomez-Uchida, D., and M.A. Banks. 2006. Estimation of effective population size for the darkblotched rockfish sebastes crameri. Journal of Heredity. 97: 603-606. 2005 Miller, J.A., M.A. Banks, D. Gomez-Uchida, and A.L. Shanks. 2005. Population structure in black rockfish (Sebastes
melanops): a comparison between otolith microchemistry and DNA microsatellites.
Canadian Journal of Fisheries and Aquatic Sciences 62: 2189-2198.
Gomez-Uchida D., and M.A. Banks. 2005. Microsatellite analyses of spatial
genetic structure in darkblotched rockfish (Sebastes crameri): Is pooling
samples safe? Canadian Journal of Fisheries and Aquatic Sciences 62: 1874-1886. Kvitrud M.A., S.D. Riemer, R.F. Brown, M.R. Bellinger, and M.A. Banks. 2005. Pacific
harbor seals (Phoca vitulina) and salmon: genetics presents hard numbers
for elucidating predator-prey dynamics. Marine Biology 147: 1459-1466.
Wofford JEB, Gresswell RE, Banks MA (2005) Influence of barriers to
movement on within-watershed genetic variation of coastal cutthroat
trout. Ecological Applications 15: 628-637. 2004 Banks, MA (2004) Stock identification for the conservation of threatened or endangered species. In: Stock identification methods Eds: Cadrin, S.X., K.D. Friedland and J.R. Waldman. Elsevier Press. pp593-613. Banks, MA, Jacobson DP (2004) Which Genetic Markers and GSI Methods are More Appropriate For Defining Marine Distribution and Migration of Salmon? North Pacific Anadromous Fish Commission Technical Note 5: 39-42. 2003 Greig C, Jacobson DP, Banks MA (2003) New tetranucleotide microsatellites
for fine-scale discrimination among endangered Chinook salmon (Oncorhynchus
tshawytscha). Molecular Ecology Notes 3: 376-379. Gomez-Uchida D, Hoffman EA, Ardren WR, Banks MA (2003) Microsatellite
markers for the heavily exploited canary (Sebastes pinniger) and other
rockfish species. Molecular Ecology Notes 3: 387-389. Banks MA, Eichert W, Olsen JB (2003) Which Genetic Loci Have Greater
Population Assignment Power? Bioinformatics 19 (11): 1436-1438. 2002 Greig CA, Robertson JM, Banks MA (2002) Rapid PCR-based species tests
for threatened sympatric salmonids. Conservation Genetics 3 (1): 83-86.
2001 Hedgecock D, Banks MA, Rashbrook VK, Dean CA, Blankenship SM (2001) Applications of population genetics to conservation of chinook salmon diversity in the Central Valley. In: Brown RL, editor. Fish Bulletin 179: Contributions to the biology of Central Valley salmonids. Sacramento (CA): California Department of Fish and Game. 2000 Banks MA, Rashbrook VK, Calavetta MJ, Dean CA, Hedgecock D (2000) Analysis
of microsatellite DNA resolves genetic structure and diversity of chinook
salmon in California’s Central Valley. Canadian Journal of Fisheries
and Aquatic Sciences 57: 915-927. Banks MA, Eichert W (2000) WHICHRUN (version 3.2) a computer program
for population assignment of individuals based on multilocus genotype
data. Journal of Heredity 91 (1): 87-89. Olsen, JB, Bentzen P, Banks MA, Shaklee JB, Young S (2000) Microsatellites
reveal population identity of individual pink salmon to allow supportive
breeding of a population at risk of extinction. Transactions of the
American Fisheries Society 129 (1): 232-242. Published Pre-2000 Greig CA, Banks MA (1999) Five multiplexed microsatellite loci for
rapid response run identification of California’s endangered winter
chinook salmon. Animal Genetics 30 (4): 318-320. Hedgecock D, Li G, Banks MA, Kain Z (1999) On the occurrence of the
Kumamoto oyster Crassostrea sikamea in Ariake Bay, Japan. Marine Biology
133: 65-68. Banks MA, Blouin M, Baldwin BA, Rashbrook VK, Fitzgerald HA, Blankenship
SM, Hedgecock D (1999) Isolation and Inheritance of Novel Microsatellites
in Chinook Salmon (Oncorhynchus tschawytscha). Journal of Heredity 90
(2): 281-288. Arkush KD, Banks MA, Hedgecock D, Siri PA, Hamelberg S (1997) Winter-run chinook salmon captive broodstock program: progress report through April 1996. Interagency Ecological Program for the San Francisco Bay/Delta Estuary Technical Report 49. Banks MA, M.J. Calavetta MJ, Greene S, Rashbrook V, Hedgecock D (1996) The question of run identity for the winter run take in 1996: Some genetic perspectives. Interagency Ecological program for the Sacramento-San Joaquin Estuary Newsletter 9 (3): 7-12. Banks MA, Baldwin BA, Hedgecock D (1996) Research on chinook salmon stock structure using microsatellite DNA. Bull. Natl. Res. Inst. Aquaculture., Suppl. 2: 5-9. Banks MA, Baldwin BA, Hedgecock D (1994) Progress in discrimination among California’s central valley chinook salmon stocks using microsatellite DNA. Proceedings of the 1994 Northeast Pacific Chinook and Coho Salmon workshop. Salmon Ecosystem Restoration: Myth and Reality. (Eds. M. Keefe and P. Lawson.) Nov 7-10, Eugene, Oregon. pp 71-76. Banks MA, McGoldrick DJ, Borgeson W, Hedgecock D (1994) Gametic incompatibility and genetic divergence of Pacific and Kumamoto oysters (Crassostrea gigas Thunberg and Crassostrea sikamea Ahmed). Marine Biology 121 (1): 127-135. Hedgecock D, Banks MA, McGoldrick DJ (1993) The status of the Kumamoto oyster Crassostrea sikamea (Amemiya 1928) in U.S. commercial brood stocks. J. Shellfish Research 12 (2): 215-221. Banks MA, Waters C, Hedgecock D (1993) Discriminating closely related Pacific oyster species (Crassostrea) via mitochondrial DNA sequences coding for large subunit rRNA. Molecular Marine Biology and Biotechnology. 2 (3): 129-136. Banks MA, Holt GJ, Wakeman JM (1991) Age linked changes in salinity tolerance of larval spotted seatrout (Cynoscion nebulosus Cuvier). Journal of Fish Biology 39: 505-514. Holt GJ, Banks MA (1988) Salinity tolerance and the development of osmoregulation in larval sciaenids. Proc. International Council for the Exploration of the Sea 63: 1-12. |
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